PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G087800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 255aa    MW: 28047.4 Da    PI: 8.2986
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G087800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33e-39561571101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++
  Manes.05G087800.1.p  56 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAC 145
                          7*************************99************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+a+l ++k++l
  Manes.05G087800.1.p 146 LQAQLMQVKAQL 157
                          ******999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.82955157IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-3856154IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSLCPKTHLA YFPAPFPSLL VCLKLNSKIL PSPYLSPIFL LFCTAMASSG SGTGSPCGAC  60
KFLRRKCASD CIFAPYFCSE QGPARFAAIH KVFGASNVSK LLLHVPVADR CEAVVTIAYE  120
AQARIRDPVY GCVAHIFALQ QQVACLQAQL MQVKAQLAQN IADSSHNMEN QWQGNIYGVP  180
FPHHHQANYY NRMMNPISPQ SSMESVEHGN DGIISMQDIQ SNSQDFPFQA CTKKRPYNPD  240
LGELQALALR MMKN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521022.11e-121PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB72e-80LBD16_ARATH; LOB domain-containing protein 16
TrEMBLB9S4L61e-121B9S4L6_RICCO; LOB domain-containing protein, putative
STRINGPOPTR_0005s24320.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-66lateral organ boundaries-domain 16